| 09:00 | - Session 4: Keynote
Session Chair: István Miklós
| Simulating and reconstructing genome evolution in vertebrates | Hugues Roest Crollius |
| 10:00 | | Prediction of microbial phenotypes based on comparative genomics | Roman Feldbauer, Frederik Schulz, Matthias Horn and Thomas Rattei. |
| 10:25 | Coffee Break | | |
| 11:00 | - Session 5: Talk 5.1
Session Chair: Chunfang Zheng
| Reconstruction of an ancestral Yersinia pestis genome and comparison with an ancient sequence | Wandrille Duchemin, Vincent Daubin and Eric Tannier |
| 11:25 | | Reconstruction of Composite Regulator-Target Splicing Networks from High-Throughput Transcriptome Data | Panagiotis Papasaikas, Arvind Rao, Peter Huggins, Juan Valcarcel and A. Javier Lopez |
| 11:50 | | A comparative genomics study on the effect of individual amino acids on ribosome stalling | Renana Sabi and Tamir Tuller |
| 12:15 | | Moments of genome evolution by Double Cut-and-Join | Priscila Biller, Laurent Gueguén and Eric Tannier |
| 12:45 | Lunch | | |
| 14:30 | - Session 6: Keynote
Session Chair: Tandy Warnow
| Strain level microbial comparative genomics using shotgun metagenomics | Nicola Segata |
| 15:30 | | Efficient algorithms for reconciling gene trees and species networks via duplication and loss events. | Thu-Hien To and Celine Scornavacca |
| 15:55 | Coffee Break | | |
| 16:20 | - Session 7: Talk 7.1
Session Chair: Katharina Jahn
| Probabilistic modeling of the evolution of gene synteny within reconciled phylogenies | Magali Semeria, Eric Tannier and Laurent Guéguen |
| 16:45 | | Reconstructing a SuperGeneTree Minimizing Reconciliation | Manuel Lafond, Nadia El-Mabrouk and Aïda Ouangraoua |
| 17:10 | | ASTRID: Accurate Species TRees from Internode Distances | Pranjal Vachaspati and Tandy Warnow |
| 17:35 | | A Comparative Study of SVDquartets and Other Coalescent-Based Species Tree Estimation Methods | Jed Chou, Ashu Gupta, Shashank Yaduvanshi, Ruth Davidson, Michael Nute, Siavash Mirarab and Tandy Warnow |
| 19:00 | Conference Dinner | | |