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start [2018/08/15 15:10] (current)
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 ===== Master Course Ecology and Evolution: Molecular evolution and Bioinformatics ====== ===== Master Course Ecology and Evolution: Molecular evolution and Bioinformatics ======
-**Slides 1:** {{wiki:​MasterEcolEvol-1.pdf}}+   ​- ​**Slides 1:** {{wiki:​MasterEcolEvol-1.pdf}}: Introduction and Perl Basics 
 +   - **Slides 2:** {{wiki:​Vorlesung-2-SeqEvol.pdf}}:​ Basic concepts in modeling sequence evolution 
 +   - **Slides 3:** {{wiki:​Vorlesung-3-Mapping.pdf}}:​ Principles of short read mapping 
 +   - **Slides 4:** {{wiki:​MasterEcolEvol4.pdf}}:​ Variant calling 
 +   - **Slides 5:** {{wiki:​MasterEcolEvol5.pdf}}:​ An introduction in WGS denovo assembly  
 +   - **Slides 6:** {{wiki:​MasterEcolEvol6-trees.pdf}}:​ A primer in phylogenetic tree reconstruction 
 +   - **Slides 7:** {{wiki:​MasterEcolEvol7-orthology.pdf}}:​ Orthology 
 +   - **Slides 8:** {{wiki:​MasterEcolEvol8-trees2.pdf}}:​ Resampling techniques and splits
  
 **Exercises:​** [[http://​www.cibiv.at/​~ingo/​Frankfurt/​MasterEcolEvol/​Main/​PerlCourse2.html|Link to the Perl exercises]] **Exercises:​** [[http://​www.cibiv.at/​~ingo/​Frankfurt/​MasterEcolEvol/​Main/​PerlCourse2.html|Link to the Perl exercises]]
 +
 +Example scripts generated during the lecture {{wiki:​perlvorlagen.tar.gz}}
  
 **General Info:** [[http://​www.cibiv.at/​~ingo/​Frankfurt/​MasterEcolEvol/​Main/​GeneralExercises.html|Link to the main course twiki]] **General Info:** [[http://​www.cibiv.at/​~ingo/​Frankfurt/​MasterEcolEvol/​Main/​GeneralExercises.html|Link to the main course twiki]]
 +
 +**Seminar Papers:​** ​  
 +   - {{wiki:​Fan2012.PNAS.pdf}}:​ Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts
 +   - {{wiki:​Leigh2008a.SystBiol.pdf}}:​ Testing Congruence in Phylogenomic Analysis
 +   - {{wiki:​Bailey2015.MBE.pdf}}:​ The Effect of Selection Environment on the Probability of Parallel Evolution
 +   - {{wiki:​Kainer2015.MBE.pdf}}:​ The Effects of Partitioning on Phylogenetic Inference
 +   - {{wiki:​gabaldon2013.NRG.pdf}}:​ Functional and evolutionary implications of gene orthology
 +   - {{wiki:​Pombert2015.mbio.pdf}}:​ The Ordospora colligata Genome: Evolution of Extreme Reduction in Microsporidia and Host-To-Parasite Horizontal Gene Transfer
start.1445845695.txt.gz · Last modified: 2018/08/15 15:10 (external edit)