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Master Course Ecology and Evolution: Molecular evolution and Bioinformatics
- Slides 1: masterecolevol-1.pdf: Introduction and Perl Basics
- Slides 2: vorlesung-2-seqevol.pdf: Basic concepts in modeling sequence evolution
- Slides 3: vorlesung-3-mapping.pdf: Principles of short read mapping
- Slides 4: masterecolevol4.pdf: Variant calling
- Slides 5: masterecolevol5.pdf: An introduction in WGS denovo assembly
- Slides 6: masterecolevol6-trees.pdf: A primer in phylogenetic tree reconstruction
- Slides 7: masterecolevol7-orthology.pdf: Orthology
- Slides 8: masterecolevol8-trees2.pdf: Resampling techniques and splits
Exercises: Link to the Perl exercises
Example scripts generated during the lecture perlvorlagen.tar.gz
General Info: Link to the main course twiki
Seminar Papers:
- fan2012.pnas.pdf: Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts
- leigh2008a.systbiol.pdf: Testing Congruence in Phylogenomic Analysis
- bailey2015.mbe.pdf: The Effect of Selection Environment on the Probability of Parallel Evolution
- kainer2015.mbe.pdf: The Effects of Partitioning on Phylogenetic Inference
- gabaldon2013.nrg.pdf: Functional and evolutionary implications of gene orthology
- pombert2015.mbio.pdf: The Ordospora colligata Genome: Evolution of Extreme Reduction in Microsporidia and Host-To-Parasite Horizontal Gene Transfer
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