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| start [2015/11/03 06:44] – ingo | start [2018/08/15 15:10] (current) – external edit 127.0.0.1 |
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| ===== Master Course Ecology and Evolution: Molecular evolution and Bioinformatics ====== | ===== Master Course Ecology and Evolution: Molecular evolution and Bioinformatics ====== |
| **Slides 1:** {{wiki:MasterEcolEvol-1.pdf}} | - **Slides 1:** {{wiki:MasterEcolEvol-1.pdf}}: Introduction and Perl Basics |
| | - **Slides 2:** {{wiki:Vorlesung-2-SeqEvol.pdf}}: Basic concepts in modeling sequence evolution |
| | - **Slides 3:** {{wiki:Vorlesung-3-Mapping.pdf}}: Principles of short read mapping |
| | - **Slides 4:** {{wiki:MasterEcolEvol4.pdf}}: Variant calling |
| | - **Slides 5:** {{wiki:MasterEcolEvol5.pdf}}: An introduction in WGS denovo assembly |
| | - **Slides 6:** {{wiki:MasterEcolEvol6-trees.pdf}}: A primer in phylogenetic tree reconstruction |
| | - **Slides 7:** {{wiki:MasterEcolEvol7-orthology.pdf}}: Orthology |
| | - **Slides 8:** {{wiki:MasterEcolEvol8-trees2.pdf}}: Resampling techniques and splits |
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| **Exercises:** [[http://www.cibiv.at/~ingo/Frankfurt/MasterEcolEvol/Main/PerlCourse2.html|Link to the Perl exercises]] | **Exercises:** [[http://www.cibiv.at/~ingo/Frankfurt/MasterEcolEvol/Main/PerlCourse2.html|Link to the Perl exercises]] |
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| A small example script generated during the lecture {{wiki:example-perlscript.txt}} | Example scripts generated during the lecture {{wiki:perlvorlagen.tar.gz}} |
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| **General Info:** [[http://www.cibiv.at/~ingo/Frankfurt/MasterEcolEvol/Main/GeneralExercises.html|Link to the main course twiki]] | **General Info:** [[http://www.cibiv.at/~ingo/Frankfurt/MasterEcolEvol/Main/GeneralExercises.html|Link to the main course twiki]] |
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| **Seminar Papers:** | **Seminar Papers:** |
| - {{test|wiki:Fan2012.PNAS.pdf}} | - {{wiki:Fan2012.PNAS.pdf}}: Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts |
| - {{wiki:Leigh2008a.SystBiol.pdf}} | - {{wiki:Leigh2008a.SystBiol.pdf}}: Testing Congruence in Phylogenomic Analysis |
| - {{wiki:Bailey2015.MBE.pdf}} | - {{wiki:Bailey2015.MBE.pdf}}: The Effect of Selection Environment on the Probability of Parallel Evolution |
| - {{wiki:Kainer2015.MBE.pdf}} | - {{wiki:Kainer2015.MBE.pdf}}: The Effects of Partitioning on Phylogenetic Inference |
| - {{wiki:gabaldon2013.NRG.pdf}} | - {{wiki:gabaldon2013.NRG.pdf}}: Functional and evolutionary implications of gene orthology |
| - {{wiki:Pombert2015.mbio.pdf}} | - {{wiki:Pombert2015.mbio.pdf}}: The Ordospora colligata Genome: Evolution of Extreme Reduction in Microsporidia and Host-To-Parasite Horizontal Gene Transfer |
