EcoEvo 2015

1. Slides 1: masterecolevol-1.pdf: Introduction and Perl Basics
2. Slides 2: vorlesung-2-seqevol.pdf: Basic concepts in modeling sequence evolution
3. Slides 3: vorlesung-3-mapping.pdf: Principles of short read mapping
4. Slides 4: masterecolevol4.pdf: Variant calling
5. Slides 5: masterecolevol5.pdf: An introduction in WGS denovo assembly
6. Slides 6: masterecolevol6-trees.pdf: A primer in phylogenetic tree reconstruction
7. Slides 7: masterecolevol7-orthology.pdf: Orthology
8. Slides 8: masterecolevol8-trees2.pdf: Resampling techniques and splits

Exercises: Link to the Perl exercises

Example scripts generated during the lecture perlvorlagen.tar.gz

General Info: Link to the main course twiki

Seminar Papers:

1. fan2012.pnas.pdf: Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts
2. leigh2008a.systbiol.pdf: Testing Congruence in Phylogenomic Analysis
3. bailey2015.mbe.pdf: The Effect of Selection Environment on the Probability of Parallel Evolution
4. kainer2015.mbe.pdf: The Effects of Partitioning on Phylogenetic Inference
5. gabaldon2013.nrg.pdf: Functional and evolutionary implications of gene orthology
6. pombert2015.mbio.pdf: The Ordospora colligata Genome: Evolution of Extreme Reduction in Microsporidia and Host-To-Parasite Horizontal Gene Transfer