InterPro

To run InterPro locally, you need to download the InterPro databases and modify the configure file of the program. Luckily, we already have a ready to use version of InterProScan available :)

You can find InterProScan at /share/project/interproscan-5.28-67.0

You can even run it straight from the share folder and don't even have to copy it. Because InterProScan takes up a lot of memory, you should send this job to our cluster:

Please note, that InterProScan can not create folders for the output. That means that you need to use an existing directory that does not contain special characters like dots in its name for the output.

RunInterpro.sh

#!/bin/bash
 
#SBATCH --partition=all,inteli7
#SBATCH --cpus-per-task=5
#SBATCH --mem=10GB
#SBATCH --job-name="InterProTest"
 
 
bash /share/project/interproscan-5.28-67.0/interproscan.sh -i /path/to/trinity_output -b /path/to/output -goterms -cpu 5 

Just download and modify this file, then send it to the cluster with

sbatch RunInterpro.sh