InterPro

To run InterPro locally, you need to download the InterPro databases and modify the configure file of the program. Luckily, we already have a ready to use version of InterProScan available :)

You can find InterProScan at /share/project/interproscan-5.28-67.0

You can even run it straight from the share folder and don't even have to copy it. Because InterProScan takes up a lot of memory, you should send this job to our cluster:

RunInterpro.sh

#!/bin/bash
 
#SBATCH --partition=all,inteli7
#SBATCH --cpus-per-task=5
#SBATCH --mem=10GB
#SBATCH --job-name="InterProTest"
 
 
bash /share/project/interproscan-5.28-67.0/interproscan.sh -i /path/to/trinity_output -b /path/to/output -goterms -cpu 5 

Just download and modify this file, then send it to the cluster with

sbatch RunInterpro.sh