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Module 1: Datasets

What species are available for my analysis and how are they related to each other?

Assumption: All species are related to each other, and this relationship can be represented by a tree

Analysis

Task 1: What species are available for my analysis?

  1. Go to NCBI Datasets
  2. Search for all available eukaryotic genomes
  3. Filter for genomes “with RefSeq Annotation”
  4. Add column “taxid”
  5. Download table in CSV format
  1. Extract the information from the “taxid” column and save it in a .txt file
  2. Go to NCBI CommonTree and upload your .txt file (→ menu: Add from file)

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