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general:computerenvironment:software:trimmomatic [2022/04/22 08:47] – updated example program call freyageneral:computerenvironment:software:trimmomatic [2024/05/19 13:40] (current) – [Example program call] freya
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 ==== Example program call ==== ==== Example program call ====
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-trimmomatic PE -phred33 <Inputfile-Forward>.fq <Inputfile-Reverse>.fq <Forwared_trimm_paired>.fq.gz <Forward_trimm_unpaired>.fq.gz <Reverse_trimm_paired>.fq.gz <Reverse_trimm_unpaired>.fq.gz ILLUMINACLIP:TruSeq3-PE.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36+trimmomatic PE -phred33 <Inputfile-Forward>.fq <Inputfile-Reverse>.fq <Forward_trimm_paired>.fq.gz <Forward_trimm_unpaired>.fq.gz <Reverse_trimm_paired>.fq.gz <Reverse_trimm_unpaired>.fq.gz ILLUMINACLIP:TruSeq3-PE.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36
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