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--- general:computerenvironment:software:rnaquast_step_by_step [2024/04/25 07:25] – freya
+++ general:computerenvironment:software:rnaquast_step_by_step [2025/05/02 06:58] (current) – [Running rnaQUAST] freya
@@ Line 3: / Line 3: @@
 ===== Installation of rnaQUAST =====
-<WRAP center round important 60%>
-Since the current version of rnaQUAST has a bug, please use the conda environment of mbw15. You can activate it with the command:<code>conda activate /home/mbw15/miniforge3/envs/rnaquast</code>
-</WRAP>
   * Create an anaconda environment for rnaQUAST and install it in the new environment.<WRAP>
@@ Line 44: / Line 39: @@
     * Run this command in your rnaQUAST conda environment:
 <code>
-#This is just a suggestion, feel free to add any parameters that strike you as useful
+rnaQUAST.py --transcripts </path/to/>Trinity.fasta --busco </path/to/buscoset_odb12> -o </home/practixeXX/path/to/output>
-rnaQUAST.py --transcripts </path/to/>Trinity.fasta --busco </path/to/>buscoset_odb10 -o </home/practixeXX/path/to/output>
 </code>
 </hidden>