meta data for this page
  •  

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
general:computerenvironment:software:rnaquast_step_by_step [2024/04/24 11:53] – freyageneral:computerenvironment:software:rnaquast_step_by_step [2025/05/02 06:58] (current) – [Running rnaQUAST] freya
Line 3: Line 3:
  
 ===== Installation of rnaQUAST ===== ===== Installation of rnaQUAST =====
-  * Create an anaconda environment for rnaQUAST with pyton 3.8 and install it in the new environment.<WRAP>+ 
 +  * Create an anaconda environment for rnaQUAST and install it in the new environment.<WRAP>
 <code>conda create --name "quastbusco" <code>conda create --name "quastbusco"
 conda activate quastbusco conda activate quastbusco
Line 38: Line 39:
     * Run this command in your rnaQUAST conda environment:     * Run this command in your rnaQUAST conda environment:
 <code> <code>
-#This is just a suggestion, feel free to add any parameters that strike you as useful  +rnaQUAST.py --transcripts </path/to/>Trinity.fasta --busco </path/to/buscoset_odb12> -o </home/practixeXX/path/to/output>
-rnaQUAST.py --transcripts </path/to/>Trinity.fasta --busco_lineage </path/to/>buscoset_odb10 -o </home/practixeXX/path/to/output>+
 </code> </code>
 </hidden> </hidden>