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general:computerenvironment:plan7_phmm [2019/01/21 20:27] – ingogeneral:computerenvironment:plan7_phmm [2019/01/21 20:28] (current) – ingo
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 Plan7 pHMMs have additional emitting states, N, C, and J that model residues inbetween two domain instances (J) as well as sequences flanking the domain (N, J) (Fig. {{ref>Plan7}}). Plan7 pHMMs have additional emitting states, N, C, and J that model residues inbetween two domain instances (J) as well as sequences flanking the domain (N, J) (Fig. {{ref>Plan7}}).
  
-<figure Plan7> {{:general:bioseqanalysis:images:plan7phmm.png?400|}} +<figure Plan7>  
-<caption><0.8em>Each triple (Mi, Ii, Di) is called a node. PLAN7 pHMMs have only 7 transitions per node as I->D and D->I transitions are not allowed</fs></caption></figure>+{{:general:bioseqanalysis:images:plan7phmm.png?400|}} 
 +<caption><fs 0.8em>Each triple (Mi, Ii, Di) is called a node. PLAN7 pHMMs have only 7 transitions per node as I->D and D->I transitions are not allowed</fs></caption></figure>