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general:computerenvironment:coursewiki [2021/10/18 21:20] – [Course WIKI and Protocol] ingogeneral:computerenvironment:coursewiki [2023/04/04 13:25] (current) – [Course WIKI and Protocol] freya
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 ===== Documentation ===== ===== Documentation =====
  
-Within this course, we will do quite a number of analyses and //in silico// experiments. Similar to the work in the wet lab, it will be necessary for you to document your work thoroughly. So far, you were used to document your work in a lab book. Switching now to an on-line documentation using a [[https://www.dokuwiki.org/|DokuWiki]] might be, therefore, a bit tedious in the beginning. However, we strongly encourage you to use this system, as it helps to very rapidly and easily not only to document your work, but to also interconnect it with the work of your peers, and with information existing in the public domain.+Within this course, we will do quite a number of analyses and //in silico// experiments. Similar to the work in the wet lab, it will be necessary for you to document your work thoroughly. So far, you were probably used to document your work in a [[wp>Lab_notebook|lab notebook]]. Here, we will do all documentation using a DokuWiki. This is a simple to use and highly versatile Open Source [[wp>wiki]] software with a clean and readable syntax. This will probably require some efforts in the beginning, but you will quickly get used to it. The DokuWiki not only helps to very rapidly and easily document your work but to also allows to work together with your peers, and makes it straightforward to link to information existing in the public domain.
  
 ==== The course wiki ==== ==== The course wiki ====
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 ==== Adding wiki pages ==== ==== Adding wiki pages ====
  
-In addition to editing page contents, you can also add pages. To control this addition of pages a bit, we have reserved one namespace, [[general:dokuwiki:studentarea|studentarea]], for this. Just imagine this as a directory, where you can add new information. At the start page of this namespace, you will find a menu add new page, which you can use for this purpose. Give the new page a meaningful name. <wrap important></wrap>Don't use whitespaces, and keep in mind that capitalisation will be ignored</wrap>. Put in the information you have in mind, save it, and it will appear in the [[https://applbio.biologie.uni-frankfurt.de/teaching/wiki/doku.php?id=general:computerenvironment:coursewiki&do=index|Sitemap]] menu. You can then start linking to this information.+In addition to editing page contents, you can also add pages. To control this addition of pages a bit, we have reserved one namespace, [[general:dokuwiki:studentarea|studentarea]], for this. Just imagine this as a directory, where you can add new information. At the start page of this namespace, you will find a menu add new page, which you can use for this purpose. Give the new page a meaningful name. <wrap important>Don't use whitespaces, and keep in mind that capitalisation will be ignored</wrap>. Put in the information you have in mind, save it, and it will appear in the [[https://applbio.biologie.uni-frankfurt.de/teaching/wiki/doku.php?id=general:computerenvironment:coursewiki&do=index|Sitemap]] menu. You can then start linking to this information.
  
 ==== Deleting wiki pages ==== ==== Deleting wiki pages ====
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 <WRAP important>The protocol is fundamentally different from the documentation of the project progress as it is reflected in your DOKUWIKI. However, if your project documentation is organized in the appropriate way, you can use large parts of it for your protocol.</WRAP> <WRAP important>The protocol is fundamentally different from the documentation of the project progress as it is reflected in your DOKUWIKI. However, if your project documentation is organized in the appropriate way, you can use large parts of it for your protocol.</WRAP>
 +
 +<WRAP tabs>
 +   * [[general:dokuwiki:how2document|Read more about protocols]]
 +</WRAP>
 +
 +-----
 +
 +<WRAP tabs>
 +   * [[general:computerenvironment:wiki|Wiki Main Page]]
 +   * [[general:computerenvironment|Computer Environment Main Page]]
 +</WRAP>
 +
 +----
  
 <WRAP tabs> <WRAP tabs>
    * [[ecoevo_molevol:course_introduction|Back to EcoEvo main page]]    * [[ecoevo_molevol:course_introduction|Back to EcoEvo main page]]
-   * [[general:computerenvironment:wiki|More information about WIKIs]]+   * [[pbioc_basics:start|Back to PBioC main page]] 
 +   * [[mbw_bioinf:mastermbw|Back to MBW main page]] 
 +   * [[digikomp_bio:course_introduction|Back to DigiKomp main page]]
 </WRAP> </WRAP>
 +
 +