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general:computerenvironment:conda [2024/04/15 12:40] – freyageneral:computerenvironment:conda [2024/04/15 12:45] (current) – freya
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   - If the installation was successful, you can ask for further help with the individual commands,such as, //e.g. //**//install//**  , **//update//**  , **//remove//**  by typing<code>conda install --help</code>   - If the installation was successful, you can ask for further help with the individual commands,such as, //e.g. //**//install//**  , **//update//**  , **//remove//**  by typing<code>conda install --help</code>
   - <wrap important>Do not install anything in your ''base'' environment. This might cause Mamba/Anaconda to malfunction. Always create a new environment and install packages in there</wrap>   - <wrap important>Do not install anything in your ''base'' environment. This might cause Mamba/Anaconda to malfunction. Always create a new environment and install packages in there</wrap>
-  - You are now ready to install any software that is distributed via the [[http://conda.io/docs/index.html|conda package manager]] using the following command<code>mamba install -c CHANNELNAME PACKAGENAME</code>+  - You are now ready to install any software that is distributed via the [[http://conda.io/docs/index.html|conda package manager]] using the following command<code>mamba install CHANNELNAME::PACKAGENAME</code>
   - The software packages are distributed via different channels. We will mainly use the channels [[https://anaconda.org/bioconda|bioconda]] and [[https://anaconda.org/conda-forge|conda-forge]].   - The software packages are distributed via different channels. We will mainly use the channels [[https://anaconda.org/bioconda|bioconda]] and [[https://anaconda.org/conda-forge|conda-forge]].
   - To simplify your life, it might be a good idea to add frequently used channels to a list of channels where [[http://conda.io/docs/index.html|conda]] searches for your package by default. Use the following syntax to add the channels [[https://bioconda.github.io|bioconda]] and [[https://bioconda.github.io|conda-forge]] to your default channel list<code>   - To simplify your life, it might be a good idea to add frequently used channels to a list of channels where [[http://conda.io/docs/index.html|conda]] searches for your package by default. Use the following syntax to add the channels [[https://bioconda.github.io|bioconda]] and [[https://bioconda.github.io|conda-forge]] to your default channel list<code>