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| general:bioseqanalysis:genesetanalysis [2022/03/07 11:10] – ingo | general:bioseqanalysis:genesetanalysis [2024/02/15 06:58] (current) – ingo | ||
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| <WRAP round box center> | <WRAP round box center> | ||
| - Assess the quality of the annotated gene set with respect to | - Assess the quality of the annotated gene set with respect to | ||
| - | - possibile contaminations. :!: We could have done this already during the assembly , e.g. using BlobTools, but we didn' | + | - possibile contaminations. :!: We could have done this already during the assembly , e.g. using [[https:// |
| - completeness in terms of gene loci | - completeness in terms of gene loci | ||
| - completeness of the gene structure | - completeness of the gene structure | ||
| - | - Trace evolutionary changes in the gene set. :!: We will be concentrating on the loss of genes in C. hominis. Think about why we have this focus. | + | - Trace evolutionary changes in the gene set. :!: We will be concentrating on the loss of genes in //C. parvum//((why is analysing gene gain harder??)) |
| </ | </ | ||
| Once you have completed this set of excersises, you should have an idea how to | Once you have completed this set of excersises, you should have an idea how to | ||