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compgenomics:modul5 [2025/05/16 11:22] – felixcompgenomics:modul5 [2025/05/16 13:55] (current) – [Analysis] felix
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 === Task 1: Spodoptera litura === === Task 1: Spodoptera litura ===
  
-  * Find the NCBI accession ID of the GH28_QRW23661.1 in //Spodoptera litura// using the [[https://ebersberger-46-155.biologie.uni-frankfurt.de/phyloppcd/|interactive webviewer]]<WRAP spoiler Spoiler>+  * Find the NCBI accession ID of the GH28_QRW23661.1 in //Spodoptera litura// using the [[https://ebersberger-46-155.biologie.uni-frankfurt.de/phyloppcd/|interactive webviewer]]<WRAP 200px><hidden Spoiler>
 [[https://www.ncbi.nlm.nih.gov/protein/XP_022836218.1?report=genpept|XP_022836218.1]] [[https://www.ncbi.nlm.nih.gov/protein/XP_022836218.1?report=genpept|XP_022836218.1]]
-</WRAP>+</hidden></WRAP>
   * Perform a [[https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins|BLASTp search]] against the "Non-redundant protein sequences (nr)" database   * Perform a [[https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins|BLASTp search]] against the "Non-redundant protein sequences (nr)" database
   * Take a look at the list of best hits. Which taxonomic clade do they represent?   * Take a look at the list of best hits. Which taxonomic clade do they represent?
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 === Task 2: Bradysia coprophila === === Task 2: Bradysia coprophila ===
  
-  * placeholder+  * Repeat the analysis with the GH28_QRW23661.1 ortholog in //Bradysia coprophila//<WRAP 200px><hidden Spoiler> 
 +[[https://www.ncbi.nlm.nih.gov/protein/XP_037031340.1]] 
 +</hidden></WRAP>
  
 === Summary and Discussion === === Summary and Discussion ===
 +
 +  * Note down your observation and discuss with the group