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compgenomics:modul5 [2025/05/16 11:11] – created felixcompgenomics:modul5 [2025/05/16 13:55] (current) – [Analysis] felix
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 ==== Analysis ==== ==== Analysis ====
  
-=== Task 1 ===+In this module, we will analyse the orthologs of the GH28 glycosyl hydrolase in the two invertebrates //Bradysia coprophila// and //Spodoptera litura// in more detail.  
 + 
 +=== Task 1: Spodoptera litura === 
 + 
 +  * Find the NCBI accession ID of the GH28_QRW23661.1 in //Spodoptera litura// using the [[https://ebersberger-46-155.biologie.uni-frankfurt.de/phyloppcd/|interactive webviewer]]<WRAP 200px><hidden Spoiler> 
 +[[https://www.ncbi.nlm.nih.gov/protein/XP_022836218.1?report=genpept|XP_022836218.1]] 
 +</hidden></WRAP> 
 +  * Perform a [[https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins|BLASTp search]] against the "Non-redundant protein sequences (nr)" database 
 +  * Take a look at the list of best hits. Which taxonomic clade do they represent? 
 + 
 + 
 +=== Task 2: Bradysia coprophila === 
 + 
 +  * Repeat the analysis with the GH28_QRW23661.1 ortholog in //Bradysia coprophila//<WRAP 200px><hidden Spoiler> 
 +[[https://www.ncbi.nlm.nih.gov/protein/XP_037031340.1]] 
 +</hidden></WRAP> 
 + 
 +=== Summary and Discussion === 
 + 
 +  * Note down your observation and discuss with the group
  
-* Placeholder