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compgenomics:modul3 [2025/09/23 13:24] – [Task 2: GH28_QRW23661.1] felixcompgenomics:modul3 [2025/09/23 13:26] (current) – felix
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-==== Analysis ====+===== Analysis =====
  
 In this exercise, we will extract the sequences of a subset of orthologs for two PCD gene families from [[https://ebersberger-46-155.biologie.uni-frankfurt.de/phyloppcd/|our interactive webtool]]. We will align these sequences and calculate a phylogenetic tree. This tree will then help us to better understand the evolutionary history of the gene family In this exercise, we will extract the sequences of a subset of orthologs for two PCD gene families from [[https://ebersberger-46-155.biologie.uni-frankfurt.de/phyloppcd/|our interactive webtool]]. We will align these sequences and calculate a phylogenetic tree. This tree will then help us to better understand the evolutionary history of the gene family
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-=== Solution ===+=== Shortcut to Sequence file ===
  
 <hidden GH27_QRW17738.fa> <hidden GH27_QRW17738.fa>
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 </file></WRAP> </file></WRAP>
  
-=== Solution ===+=== Shortcut to Sequence file ===
  
 <hidden GH28_QRW23661.1.fa> <hidden GH28_QRW23661.1.fa>
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   * Why is GH28 of //Spodoptera litura// identical to a bacterial sequence? What are the consequences given the assumptions stated above?   * Why is GH28 of //Spodoptera litura// identical to a bacterial sequence? What are the consequences given the assumptions stated above?
  
-{{ :compgenomics:cellulase_all.extended.fa.gz |}}+==== Supplementary Data === 
 + 
 +{{ :compgenomics:cellulase_all.extended.fa.gz |all_cellulase_sequences.fa.gz}}
  
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