meta data for this page
  •  

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
compgenomics:modul2 [2025/09/23 13:48] – [Task 2: Exploration] felixcompgenomics:modul2 [2025/09/23 13:53] (current) – felix
Line 54: Line 54:
 rm ~/miniconda3/miniconda.sh rm ~/miniconda3/miniconda.sh
 </code></WRAP> </code></WRAP>
-  - Install Conplex and start PhyloProfile<WRAP>+  - Install Conplex (our local software management system)<WRAP>
 <code> <code>
 echo 'CONPLEX_ENVS_FILE=/home/worker/data/conplex/envs.tsv' >> ~/.bashrc echo 'CONPLEX_ENVS_FILE=/home/worker/data/conplex/envs.tsv' >> ~/.bashrc
 echo 'alias conplex="source /home/worker/bin/conplex.sh"' >> ~/.bashrc echo 'alias conplex="source /home/worker/bin/conplex.sh"' >> ~/.bashrc
 source ~/.bashrc source ~/.bashrc
-</code> +</code></WRAP>
-<code> +
-conplex load phyloprofile +
-</code>+
   -  Download and unpack the input data<WRAP>   -  Download and unpack the input data<WRAP>
 <code> <code>
 wget https://applbio.biologie.uni-frankfurt.de/download/fDOG_pPCD/pPCD-PhylogeneticProfiles.tar.gz wget https://applbio.biologie.uni-frankfurt.de/download/fDOG_pPCD/pPCD-PhylogeneticProfiles.tar.gz
 +tar -zxvf pPCD-PhylogeneticProfiles.tar.gz 
 +</code></WRAP> 
 +  - Start Phyloprofile<WRAP> 
 +<code> 
 +conplex load phyloprofile
 </code></WRAP> </code></WRAP>
 +  - Upload the file you downloaded to PhyloProfile
   - <wrap tip>Wait a moment </wrap> for the data to load. Once you were redirected to the "Main profile" page, select a taxonomic rank and click the red **PLOT** button   - <wrap tip>Wait a moment </wrap> for the data to load. Once you were redirected to the "Main profile" page, select a taxonomic rank and click the red **PLOT** button
   - Explore the "Main plot" on different taxonomic levels   - Explore the "Main plot" on different taxonomic levels