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compgenomics:modul2 [2025/09/23 13:29] – felixcompgenomics:modul2 [2025/09/23 13:53] (current) – felix
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   - Open the visualizaiton of the results using [[https://ebersberger-46-155.biologie.uni-frankfurt.de/phyloppcd/|this interactive web-viewer]]   - Open the visualizaiton of the results using [[https://ebersberger-46-155.biologie.uni-frankfurt.de/phyloppcd/|this interactive web-viewer]]
- 
  
 === Route 2: Local PhyloProfile installation === === Route 2: Local PhyloProfile installation ===
  
-  - <wrap important>Alternatively:</wrap> start PhyloProfile locally and input the data deposited at: ''https://applbio.biologie.uni-frankfurt.de/download/fDOG_pPCD/pPCD-PhylogeneticProfiles.tar.gz'' +  - Install Miniconda<WRAP> 
 +<code> 
 +mkdir -p ~/miniconda3 
 +wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda3/miniconda.sh 
 +bash ~/miniconda3/miniconda.sh -b -u -p ~/miniconda3 
 +rm ~/miniconda3/miniconda.sh 
 +</code></WRAP> 
 +  - Install Conplex (our local software management system)<WRAP> 
 +<code> 
 +echo 'CONPLEX_ENVS_FILE=/home/worker/data/conplex/envs.tsv' >> ~/.bashrc 
 +echo 'alias conplex="source /home/worker/bin/conplex.sh"' >> ~/.bashrc 
 +source ~/.bashrc 
 +</code></WRAP> 
 +  -  Download and unpack the input data<WRAP> 
 +<code> 
 +wget https://applbio.biologie.uni-frankfurt.de/download/fDOG_pPCD/pPCD-PhylogeneticProfiles.tar.gz 
 +tar -zxvf pPCD-PhylogeneticProfiles.tar.gz 
 +</code></WRAP> 
 +  - Start Phyloprofile<WRAP> 
 +<code> 
 +conplex load phyloprofile 
 +</code></WRAP> 
 +  - Upload the file you downloaded to PhyloProfile
   - <wrap tip>Wait a moment </wrap> for the data to load. Once you were redirected to the "Main profile" page, select a taxonomic rank and click the red **PLOT** button   - <wrap tip>Wait a moment </wrap> for the data to load. Once you were redirected to the "Main profile" page, select a taxonomic rank and click the red **PLOT** button
   - Explore the "Main plot" on different taxonomic levels   - Explore the "Main plot" on different taxonomic levels