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compgenomics:modul2 [2025/05/17 09:50] – [Analysis] felixcompgenomics:modul2 [2025/05/17 12:54] (current) – felix
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 === Task 2: Exploration === === Task 2: Exploration ===
  
-  - Open a visualizaiton of the results generated using [[https://ebersberger-46-155.biologie.uni-frankfurt.de/phyloppcd/|this interactive web-viewer]] +  - Open a visualizaiton of the results generated using [[https://ebersberger-46-155.biologie.uni-frankfurt.de/phyloppcd/|this interactive web-viewer]] 
 +  - <wrap important>Alternatively:</wrap> start PhyloProfile locally and input the data deposited at: ''https://applbio.biologie.uni-frankfurt.de/download/fDOG_pPCD/pPCD-PhylogeneticProfiles.tar.gz'' 
   - <wrap tip>Wait a moment </wrap> for the data to load. Once you were redirected to the "Main profile" page, select a taxonomic rank and click the red **PLOT** button   - <wrap tip>Wait a moment </wrap> for the data to load. Once you were redirected to the "Main profile" page, select a taxonomic rank and click the red **PLOT** button
   - Explore the "Main plot" on different taxonomic levels   - Explore the "Main plot" on different taxonomic levels
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     - Which information is displayed in the rows, which in the columns?     - Which information is displayed in the rows, which in the columns?
     - What patterns can you observe in the plot and how do you interpret them?     - What patterns can you observe in the plot and how do you interpret them?
-  - Select the "Dimension reduction" plot from the top menu and explore the plot with "Phylum"-level labels 
  
 === Summary and Disussion === === Summary and Disussion ===