##FastQC 0.10.1 >>Basic Statistics pass #Measure Value Filename TA100_1P.fq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4331137 Filtered Sequences 0 Sequence length 50-150 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 36.45963611864506 37.0 37.0 37.0 37.0 37.0 2 36.46213453880586 37.0 37.0 37.0 37.0 37.0 3 36.528390120192455 37.0 37.0 37.0 37.0 37.0 4 36.54613765392321 37.0 37.0 37.0 37.0 37.0 5 36.57044120285274 37.0 37.0 37.0 37.0 37.0 6 36.58037577661478 37.0 37.0 37.0 37.0 37.0 7 36.57028858703846 37.0 37.0 37.0 37.0 37.0 8 36.57420649589242 37.0 37.0 37.0 37.0 37.0 9 36.573772891506316 37.0 37.0 37.0 37.0 37.0 10-14 36.576730590604726 37.0 37.0 37.0 37.0 37.0 15-19 36.56614690322657 37.0 37.0 37.0 37.0 37.0 20-24 36.54941162101314 37.0 37.0 37.0 37.0 37.0 25-29 36.519533092580545 37.0 37.0 37.0 37.0 37.0 30-34 36.505714734952974 37.0 37.0 37.0 37.0 37.0 35-39 36.490706481923795 37.0 37.0 37.0 37.0 37.0 40-44 36.479014217282895 37.0 37.0 37.0 37.0 37.0 45-49 36.45931297024315 37.0 37.0 37.0 37.0 37.0 50-54 36.444389023028364 37.0 37.0 37.0 37.0 37.0 55-59 36.43853733679604 37.0 37.0 37.0 37.0 37.0 60-64 36.43454326372893 37.0 37.0 37.0 37.0 37.0 65-69 36.420327762188926 37.0 37.0 37.0 37.0 37.0 70-74 36.419693209893474 37.0 37.0 37.0 37.0 37.0 75-79 36.407903014151586 37.0 37.0 37.0 37.0 37.0 80-84 36.387925730449695 37.0 37.0 37.0 37.0 37.0 85-89 36.37420309457512 37.0 37.0 37.0 37.0 37.0 90-94 36.38071996088049 37.0 37.0 37.0 37.0 37.0 95-99 36.35813842782714 37.0 37.0 37.0 37.0 37.0 100-104 36.344055472363664 37.0 37.0 37.0 37.0 37.0 105-109 36.33463075319488 37.0 37.0 37.0 37.0 37.0 110-114 36.31755715229967 37.0 37.0 37.0 37.0 37.0 115-119 36.30049085750615 37.0 37.0 37.0 37.0 37.0 120-124 36.26516868625991 37.0 37.0 37.0 37.0 37.0 125-129 36.272062752877794 37.0 37.0 37.0 37.0 37.0 130-134 36.214350186976525 37.0 37.0 37.0 37.0 37.0 135-139 36.20859588970453 37.0 37.0 37.0 37.0 37.0 140-144 36.169468975300035 37.0 37.0 37.0 37.0 37.0 145-149 36.10901229240046 37.0 37.0 37.0 37.0 37.0 150 36.51827243410809 37.0 37.0 37.0 37.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 25 2.0 26 11.0 27 162.0 28 1019.0 29 4808.0 30 14476.0 31 33720.0 32 61033.0 33 98816.0 34 159653.0 35 337556.0 36 3064584.0 37 555297.0 >>END_MODULE >>Per base sequence content pass #Base G A T C 1 23.944716569675155 28.488929576196544 21.772098999453952 25.794254854674353 2 28.375344406396547 28.43989389302713 23.545430224407653 19.63933147616867 3 23.091504442023727 25.657229723208747 24.699997737313137 26.551268097454383 4 25.040052993013152 24.723969710494035 23.49861018019056 26.73736711630226 5 25.839958422003274 24.409133213749644 23.753000655486076 25.997907708761005 6 25.908740276505014 23.280097840449603 23.843645531088516 26.967516351956867 7 26.85525462676476 23.81400765847558 23.40337593583579 25.927361778923864 8 25.208784667859735 23.67126692136499 24.796514171682862 26.323434239092414 9 25.7893943322504 23.478407632914866 24.687789834401453 26.044408200433285 10-14 25.833526665206207 24.333443729526984 24.08799844989706 25.74503115536974 15-19 25.868883851976975 23.94009240529681 24.157808907914944 26.033214834811275 20-24 25.976028927277063 23.967503221440467 24.02489230887871 26.03157554240376 25-29 26.031022154400375 23.958350024684343 23.92338881149746 26.08723900941782 30-34 26.11122206478345 23.869178001065308 23.845567572672024 26.174032361479217 35-39 26.135786153609796 23.854190991695553 23.85231617989826 26.157706674796394 40-44 26.204569377509877 23.87553199079133 23.773004640582833 26.14689399111596 45-49 26.207256893513183 23.81865547083826 23.763275093814855 26.210812541833704 50-54 26.175980004901916 23.82123355352537 23.792334041757993 26.210452399814717 55-59 26.226614013557782 23.84295793059062 23.781491141079865 26.14893691477173 60-64 26.218027402298404 23.8162494656773 23.734309552134295 26.23141357989 65-69 26.18951083864526 23.802561333844206 23.796588758461343 26.211339069049195 70-74 26.19163105219115 23.850902570117444 23.78516815585127 26.172298221840133 75-79 26.21742744729253 23.797957106447786 23.748486121706822 26.236129324552866 80-84 26.1901654240331 23.831536117772664 23.77285959123451 26.205438866959724 85-89 26.207611218927106 23.869223160698898 23.751963040230706 26.171202580143287 90-94 26.235546157224444 23.794309678130876 23.751548145366556 26.218596019278124 95-99 26.179044981476444 23.81866011460267 23.789203768668248 26.213091135252636 100-104 26.225612724780163 23.85977510726478 23.731055961369417 26.183556206585635 105-109 26.230581963065365 23.805722925771985 23.720360235911947 26.243334875250703 110-114 26.179016179055743 23.817187888394308 23.802168993975208 26.201626938574744 115-119 26.213781690946718 23.8383504287881 23.74154374282016 26.206324137445026 120-124 26.238340358193458 23.792961470474918 23.73452950051485 26.234168670816775 125-129 26.19674620358633 23.80984358053045 23.77544892993027 26.217961285952953 130-134 26.22892986786039 23.85405558328163 23.72770494837135 26.18930960048663 135-139 26.23843602159298 23.787966552528587 23.726603541426016 26.24699388445242 140-144 26.214112372466484 23.792817561923947 23.765830546570324 26.22723951903924 145-149 26.26757679441223 23.827013116537575 23.703275344313283 26.202134744736917 150 26.372641540307228 23.435161857489195 23.56417369036142 26.62802291184216 >>END_MODULE >>Per base GC content pass #Base %GC 1 49.7389714243495 2 48.014675882565214 3 49.642772539478116 4 51.77742010931541 5 51.837866130764276 6 52.87625662846188 7 52.78261640568862 8 51.532218906952146 9 51.833802532683684 10-14 51.57855782057595 15-19 51.90209868678824 20-24 52.00760446968082 25-29 52.11826116381819 30-34 52.28525442626266 35-39 52.29349282840619 40-44 52.351463368625836 45-49 52.41806943534688 50-54 52.38643240471663 55-59 52.3755509283295 60-64 52.44944098218841 65-69 52.40084990769445 70-74 52.363929274031285 75-79 52.45355677184539 80-84 52.39560429099283 85-89 52.3788137990704 90-94 52.45414217650257 95-99 52.392136116729084 100-104 52.4091689313658 105-109 52.47391683831607 110-114 52.380643117630484 115-119 52.42010582839174 120-124 52.47250902901024 125-129 52.41470748953928 130-134 52.41823946834702 135-139 52.4854299060454 140-144 52.441351891505725 145-149 52.469711539149145 150 53.00066445214938 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.5 7 1.5 8 1.5 9 2.5 10 5.5 11 7.5 12 13.5 13 39.5 14 59.0 15 86.5 16 127.0 17 203.5 18 355.0 19 520.0 20 818.0 21 1199.5 22 1557.5 23 2031.5 24 2823.5 25 3812.0 26 4894.0 27 6173.5 28 7567.5 29 9172.5 30 11135.0 31 13475.5 32 15863.0 33 18306.0 34 21260.0 35 24429.0 36 28422.5 37 33194.5 38 38315.0 39 44319.0 40 51248.5 41 59130.5 42 67576.5 43 77225.0 44 89125.0 45 101799.5 46 115761.5 47 133160.0 48 152755.5 49 173584.5 50 193630.5 51 210519.5 52 226230.5 53 238647.5 54 245636.5 55 247728.0 56 243320.5 57 231054.5 58 213826.5 59 193701.5 60 169319.0 61 143825.5 62 119202.5 63 96181.5 64 75156.5 65 56957.0 66 42163.0 67 30370.0 68 21891.5 69 15276.0 70 10106.0 71 6666.0 72 4449.0 73 3028.0 74 2093.5 75 1443.5 76 941.0 77 637.0 78 579.5 79 585.5 80 608.5 81 508.5 82 449.0 83 470.5 84 298.5 85 158.5 86 59.0 87 14.5 88 0.5 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 4.617725091586805E-5 2 0.061762073099973516 3 6.926587637380207E-5 4 0.0 5 0.0 6 9.23545018317361E-5 7 0.005749067739025573 8 0.0 9 0.0 10-14 0.0016115860569637951 15-19 0.0 20-24 0.0 25-29 0.0011913730736293957 30-34 0.0 35-39 8.219550663024512E-4 40-44 0.0 45-49 0.0 50-54 4.620964251989498E-6 55-59 1.1572166273884198E-4 60-64 0.001233349263321876 65-69 9.845828262189948E-4 70-74 0.0 75-79 2.702306800904844E-4 80-84 3.266536854492069E-4 85-89 6.075892382672415E-5 90-94 2.6213897728537673E-4 95-99 4.688261109889558E-6 100-104 5.6344527629313865E-5 105-109 2.3512000713260056E-5 110-114 1.8838371388884362E-5 115-119 0.001905625680589023 120-124 1.2755992694501252E-4 125-129 4.732340254885739E-6 130-134 6.636556294730981E-5 135-139 9.498182071696932E-6 140-144 1.903174204338771E-5 145-149 0.001644724688580915 150 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 50-54 7446.0 55-59 7465.0 60-64 6951.0 65-69 7080.0 70-74 6874.0 75-79 6781.0 80-84 6697.0 85-89 6647.0 90-94 6672.0 95-99 6428.0 100-104 6411.0 105-109 6450.0 110-114 6485.0 115-119 6657.0 120-124 7042.0 125-129 6985.0 130-134 7682.0 135-139 7685.0 140-144 7780.0 145-149 73716.0 150-151 4125203.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Duplicate Percentage 62.339561793018504 #Duplication Level Relative count 1 100.0 2 59.82249475552687 3 28.70313592598569 4 12.472701844978753 5 5.676940455058899 6 3.124092302727126 7 1.7987198106610727 8 1.1779893496853315 9 0.7993114948093163 10++ 1.5824861492119844 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 1646985 3.4477348 4.1102805 8 AAAAA 1676360 3.4115336 4.483114 1 >>END_MODULE