##FastQC 0.10.1 >>Basic Statistics pass #Measure Value Filename ICCR100_1P.fq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4433327 Filtered Sequences 0 Sequence length 50-150 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 36.416094729759386 37.0 37.0 37.0 37.0 37.0 2 36.44799424901434 37.0 37.0 37.0 37.0 37.0 3 36.52428029784404 37.0 37.0 37.0 37.0 37.0 4 36.54791424138125 37.0 37.0 37.0 37.0 37.0 5 36.5720184863422 37.0 37.0 37.0 37.0 37.0 6 36.57928436138367 37.0 37.0 37.0 37.0 37.0 7 36.57481886628259 37.0 37.0 37.0 37.0 37.0 8 36.579979099218264 37.0 37.0 37.0 37.0 37.0 9 36.58128286047928 37.0 37.0 37.0 37.0 37.0 10-14 36.584488037990425 37.0 37.0 37.0 37.0 37.0 15-19 36.57495794918805 37.0 37.0 37.0 37.0 37.0 20-24 36.55845016620701 37.0 37.0 37.0 37.0 37.0 25-29 36.52942442549353 37.0 37.0 37.0 37.0 37.0 30-34 36.51543470626011 37.0 37.0 37.0 37.0 37.0 35-39 36.503043425400385 37.0 37.0 37.0 37.0 37.0 40-44 36.4890731949166 37.0 37.0 37.0 37.0 37.0 45-49 36.47024264170001 37.0 37.0 37.0 37.0 37.0 50-54 36.45306917465519 37.0 37.0 37.0 37.0 37.0 55-59 36.44800056742686 37.0 37.0 37.0 37.0 37.0 60-64 36.44136946255172 37.0 37.0 37.0 37.0 37.0 65-69 36.42851437441362 37.0 37.0 37.0 37.0 37.0 70-74 36.42620934676138 37.0 37.0 37.0 37.0 37.0 75-79 36.41386712970204 37.0 37.0 37.0 37.0 37.0 80-84 36.39394248351396 37.0 37.0 37.0 37.0 37.0 85-89 36.375154893617115 37.0 37.0 37.0 37.0 37.0 90-94 36.38565267185653 37.0 37.0 37.0 37.0 37.0 95-99 36.357698270120956 37.0 37.0 37.0 37.0 37.0 100-104 36.34617503424764 37.0 37.0 37.0 37.0 37.0 105-109 36.33323124516825 37.0 37.0 37.0 37.0 37.0 110-114 36.31794295866402 37.0 37.0 37.0 37.0 37.0 115-119 36.2967590220828 37.0 37.0 37.0 37.0 37.0 120-124 36.262126964814634 37.0 37.0 37.0 37.0 37.0 125-129 36.26860990368116 37.0 37.0 37.0 37.0 37.0 130-134 36.21090527109851 37.0 37.0 37.0 37.0 37.0 135-139 36.204322986380475 37.0 37.0 37.0 37.0 37.0 140-144 36.16077506138902 37.0 37.0 37.0 37.0 37.0 145-149 36.09942633093925 37.0 37.0 37.0 37.0 37.0 150 36.51281393102842 37.0 37.0 37.0 37.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 26 17.0 27 143.0 28 864.0 29 4028.0 30 12796.0 31 30571.0 32 57753.0 33 96878.0 34 162137.0 35 359774.0 36 3175438.0 37 532928.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 23.96431031690428 29.53525186282263 21.1540274728274 25.346410347445687 2 28.32522349545561 28.809105347843545 24.488385052499343 18.377286104201502 3 22.4380171627429 25.89648309034034 25.28222615807011 26.383273588846652 4 24.348553580640452 25.197802914154536 23.965432732573078 26.48821077263193 5 25.353070212537993 24.79703157336762 24.097534017921085 25.7523641961733 6 25.59734537727118 23.43907718882653 24.292996472397792 26.6705809615045 7 26.5534021318083 23.995566026414355 23.68634283801379 25.764689003763554 8 24.891464130663042 23.800297158319246 25.012501897559105 26.295736813458603 9 25.65407424266245 23.513379455203733 24.814027929814337 26.018518372319477 10-14 25.725893553462075 24.364804935203217 24.225543991304637 25.683757520030063 15-19 25.739991658634697 24.09556524930374 24.26695346406886 25.897489627992705 20-24 25.88620239382297 24.01950047898565 24.113858508519673 25.98043861867171 25-29 26.004436271099763 23.983852290795188 23.99679532466398 26.014916113441068 30-34 26.089846293765383 23.905410090435467 23.884216075195898 26.120527540603256 35-39 26.099815559049528 23.872994694142193 23.902422057412547 26.12476768939574 40-44 26.16123286191161 23.909795059105722 23.828628025859587 26.10034405312308 45-49 26.193087042755923 23.808787396012068 23.8270355423816 26.1710900188504 50-54 26.14255768606078 23.816914142210276 23.852765639188583 26.18776253254036 55-59 26.186962476910736 23.8874991850316 23.79698682785001 26.128551510207654 60-64 26.185438033322527 23.818204978341853 23.80196651988507 26.194390468450546 65-69 26.14928975507638 23.856374608052374 23.833113984763816 26.161221652107425 70-74 26.190228665442667 23.90315185660807 23.770328561096104 26.13629091685316 75-79 26.179087375546082 23.83891982624301 23.75788059555943 26.224112202651472 80-84 26.15164806944094 23.84694216988632 23.8335551371975 26.167854623475247 85-89 26.177795241497304 23.891586246937706 23.780562180729973 26.15005633083502 90-94 26.1747549114553 23.837053667685296 23.77638909090112 26.21180232995829 95-99 26.170527319558367 23.815399523722107 23.840293435266933 26.17377972145259 100-104 26.17565919289578 23.895579275345682 23.78070718804436 26.14805434371418 105-109 26.201776882906152 23.815084535320093 23.77459969901302 26.208538882760728 110-114 26.158817176498992 23.850564098549512 23.810732729954715 26.179885994996777 115-119 26.180572484055308 23.865655548656857 23.80243536656617 26.15133660072167 120-124 26.195358099621807 23.796227585019604 23.80039327016975 26.208021045188833 125-129 26.147260032930603 23.846617689988474 23.825543949203333 26.18057832787759 130-134 26.183435542861734 23.859373976481276 23.787133345978255 26.170057134678732 135-139 26.206870077079316 23.799034024201166 23.77762181689062 26.2164740818289 140-144 26.160193985828844 23.84262870410792 23.809331632019017 26.18784567804422 145-149 26.20114858737844 23.8570606538481 23.773933144679837 26.16785761409362 150 26.353235545357297 23.44410707608468 23.60140645260715 26.601250925950875 >>END_MODULE >>Per base GC content warn #Base %GC 1 49.31072066434997 2 46.70250959965712 3 48.82129075158955 4 50.83676435327238 5 51.10543440871129 6 52.26792633877567 7 52.318091135571855 8 51.18720094412165 9 51.67259261498193 10-14 51.40965107349215 15-19 51.637481286627406 20-24 51.866641012494675 25-29 52.01935238454083 30-34 52.21037383436864 35-39 52.22458324844526 40-44 52.26157691503469 45-49 52.364177061606334 50-54 52.330320218601145 55-59 52.315513987118386 60-64 52.379828501773076 65-69 52.31051140718381 70-74 52.32651958229583 75-79 52.40319957819756 80-84 52.31950269291619 85-89 52.32785157233232 90-94 52.38655724141359 95-99 52.344307041010964 100-104 52.32371353660996 105-109 52.41031576566688 110-114 52.33870317149577 115-119 52.331909084776974 120-124 52.40337914481065 125-129 52.3278383608082 130-134 52.35349267754047 135-139 52.423344158908215 140-144 52.34803966387306 145-149 52.369006201472054 150 52.95448647130817 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 1.0 10 5.0 11 10.0 12 25.0 13 47.0 14 66.0 15 87.5 16 129.0 17 230.0 18 399.0 19 589.5 20 893.0 21 1284.5 22 1658.0 23 2228.5 24 3036.5 25 3910.0 26 5208.0 27 6867.0 28 8315.0 29 9854.0 30 11932.0 31 14390.0 32 17116.0 33 19943.0 34 23046.5 35 26236.5 36 30353.0 37 35401.5 38 40877.5 39 47184.0 40 54488.0 41 62645.0 42 71233.5 43 81045.5 44 92451.5 45 105694.0 46 120227.0 47 137258.0 48 156785.5 49 177633.5 50 197241.0 51 214641.0 52 230449.5 53 242802.5 54 250499.0 55 252611.0 56 247558.0 57 233973.0 58 215458.5 59 195243.0 60 170989.0 61 144488.0 62 119543.0 63 96703.5 64 75779.5 65 57314.0 66 42635.0 67 30789.5 68 21878.5 69 15377.0 70 10361.5 71 6796.5 72 4393.5 73 2942.0 74 2078.5 75 1494.5 76 993.5 77 663.5 78 623.5 79 620.5 80 599.0 81 472.5 82 382.5 83 384.0 84 251.0 85 151.5 86 62.5 87 15.0 88 0.5 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.2556423200905325E-5 2 0.06090234264244438 3 6.766926960271598E-5 4 0.0 5 4.511284640181065E-5 6 9.02256928036213E-5 7 0.006383467765856206 8 0.0 9 0.0 10-14 0.0015067690698204756 15-19 0.0 20-24 0.0 25-29 0.0012225581374890686 30-34 0.0 35-39 8.616553662745834E-4 40-44 0.0 45-49 0.0 50-54 0.0 55-59 1.6276734876132692E-4 60-64 0.0012226241435574477 65-69 0.0010113212195191526 70-74 0.0 75-79 3.456788596090809E-4 80-84 2.8696176904005003E-4 85-89 3.6492551277280345E-5 90-94 2.55813826006399E-4 95-99 1.8297616310056034E-5 100-104 9.161906369164907E-5 105-109 3.2112607721742606E-5 110-114 9.1883194775007E-6 115-119 0.0017806240769914245 120-124 1.981461355397904E-4 125-129 9.230722225091438E-6 130-134 9.707888704326002E-5 135-139 1.852266725297083E-5 140-144 2.319383140570947E-5 145-149 0.0014825719714331154 150 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 50-54 7060.0 55-59 6941.0 60-64 6523.0 65-69 6618.0 70-74 6446.0 75-79 6408.0 80-84 6372.0 85-89 6284.0 90-94 6119.0 95-99 6185.0 100-104 6238.0 105-109 6230.0 110-114 6516.0 115-119 6482.0 120-124 6878.0 125-129 6783.0 130-134 7254.0 135-139 7383.0 140-144 7555.0 145-149 76266.0 150-151 4230786.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Duplicate Percentage 62.72055981610691 #Duplication Level Relative count 1 100.0 2 60.32674531545001 3 29.546769106525083 4 13.404852069714398 5 6.185679518940097 6 3.27509249053268 7 1.865089325664895 8 1.257216444216477 9 0.8064956182951185 10++ 1.598803898244044 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 1715245 3.4547234 4.0685267 8 AAAAA 1733095 3.4093082 4.780712 1 >>END_MODULE