##FastQC 0.10.1 >>Basic Statistics pass #Measure Value Filename An98_1P.fq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3348717 Filtered Sequences 0 Sequence length 50-150 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 36.46906710838808 37.0 37.0 37.0 37.0 37.0 2 36.47664165111593 37.0 37.0 37.0 37.0 37.0 3 36.5373117525309 37.0 37.0 37.0 37.0 37.0 4 36.55756786852995 37.0 37.0 37.0 37.0 37.0 5 36.58057787504886 37.0 37.0 37.0 37.0 37.0 6 36.5846973631991 37.0 37.0 37.0 37.0 37.0 7 36.580394521245005 37.0 37.0 37.0 37.0 37.0 8 36.5853803113252 37.0 37.0 37.0 37.0 37.0 9 36.586561659286225 37.0 37.0 37.0 37.0 37.0 10-14 36.58793310990448 37.0 37.0 37.0 37.0 37.0 15-19 36.579004615797636 37.0 37.0 37.0 37.0 37.0 20-24 36.56198030469581 37.0 37.0 37.0 37.0 37.0 25-29 36.532650982450896 37.0 37.0 37.0 37.0 37.0 30-34 36.519488209962205 37.0 37.0 37.0 37.0 37.0 35-39 36.50593071913811 37.0 37.0 37.0 37.0 37.0 40-44 36.49383504189813 37.0 37.0 37.0 37.0 37.0 45-49 36.476950246915465 37.0 37.0 37.0 37.0 37.0 50-54 36.45849353339604 37.0 37.0 37.0 37.0 37.0 55-59 36.455358857683855 37.0 37.0 37.0 37.0 37.0 60-64 36.448268866524685 37.0 37.0 37.0 37.0 37.0 65-69 36.43814882155174 37.0 37.0 37.0 37.0 37.0 70-74 36.43387795766351 37.0 37.0 37.0 37.0 37.0 75-79 36.423314681123344 37.0 37.0 37.0 37.0 37.0 80-84 36.404184460902975 37.0 37.0 37.0 37.0 37.0 85-89 36.388625846421725 37.0 37.0 37.0 37.0 37.0 90-94 36.39930292458156 37.0 37.0 37.0 37.0 37.0 95-99 36.37278634637046 37.0 37.0 37.0 37.0 37.0 100-104 36.36170676578839 37.0 37.0 37.0 37.0 37.0 105-109 36.348912565053936 37.0 37.0 37.0 37.0 37.0 110-114 36.33633066961786 37.0 37.0 37.0 37.0 37.0 115-119 36.31640965990243 37.0 37.0 37.0 37.0 37.0 120-124 36.28200331895059 37.0 37.0 37.0 37.0 37.0 125-129 36.28891922845602 37.0 37.0 37.0 37.0 37.0 130-134 36.23450358358664 37.0 37.0 37.0 37.0 37.0 135-139 36.22801542734404 37.0 37.0 37.0 37.0 37.0 140-144 36.18947337464688 37.0 37.0 37.0 37.0 37.0 145-149 36.128222341398285 37.0 37.0 37.0 37.0 37.0 150 36.524764807564424 37.0 37.0 37.0 37.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 26 5.0 27 100.0 28 659.0 29 3177.0 30 9925.0 31 23871.0 32 44732.0 33 74514.0 34 120701.0 35 257428.0 36 2369886.0 37 443719.0 >>END_MODULE >>Per base sequence content pass #Base G A T C 1 24.2118996618705 28.874939267785244 21.535800128825457 25.377360941518795 2 28.249013331675936 28.506527190451493 24.05399962230504 19.190459855567536 3 22.67266697822896 25.63132425422886 25.041486062564296 26.65452270497788 4 24.702505467019158 24.94710660829207 23.756053437779304 26.594334486909467 5 25.714863334226212 24.50816237980098 23.975958553678918 25.80101573229389 6 25.846682728544312 23.323357370407045 24.06155075557318 26.76840914547546 7 26.7583092803825 23.897190247019946 23.525622552086524 25.818877920511035 8 25.0505790725224 23.785616998987972 24.90822604597522 26.25557788251441 9 25.728331178776827 23.49413223034374 24.78856827853772 25.988968312341708 10-14 25.753959664907878 24.362713619316963 24.213292978173527 25.67003373760163 15-19 25.815612367363382 24.036507116008906 24.230999514142283 25.916881002485432 20-24 25.958449161275798 23.97567187672174 24.083599778661497 25.98227918334096 25-29 26.062007248841557 23.951194995749063 23.945186645575724 26.041611109833656 30-34 26.130329914412 23.851994659447186 23.853881949415253 26.163793476725566 35-39 26.154830970876603 23.81654887530321 23.84287559442662 26.18574455939357 40-44 26.203755050068427 23.86161028238576 23.76674409930729 26.167890568238523 45-49 26.224204673013574 23.783884992371707 23.75615496920164 26.235755365413084 50-54 26.193319504881835 23.772424120217167 23.78842875594377 26.245827618957236 55-59 26.235733592812434 23.850368702424735 23.742337542186952 26.17156016257588 60-64 26.248899451965148 23.792544582162243 23.717024475420924 26.241531490451685 65-69 26.244116430283114 23.756934341193304 23.763647269825505 26.235301958698077 70-74 26.238748490057105 23.83814975650893 23.716716913910044 26.206384839523917 75-79 26.26442101256782 23.767412561554845 23.70223985267186 26.265926573205476 80-84 26.217958437385825 23.798343772658292 23.763537981254448 26.22015980870144 85-89 26.250130761130038 23.86477595937599 23.71655383964204 26.168539439851934 90-94 26.23632917165153 23.78911632104264 23.72646125595613 26.24809325134969 95-99 26.22119416796928 23.76978387460333 23.763720780018026 26.24530117740936 100-104 26.24068657856769 23.81923643319115 23.745398714581945 26.194678273659218 105-109 26.252006344494998 23.753715655245504 23.733014407776672 26.261263592482827 110-114 26.21981745242418 23.767292900353112 23.76245700156026 26.250432645662443 115-119 26.240201290448972 23.83109638697923 23.722474643453744 26.206227679118054 120-124 26.229027932984074 23.770206415404008 23.733985908471873 26.266779743140052 125-129 26.21812998360203 23.764385649829105 23.763780739016486 26.253703627552376 130-134 26.26363795591277 23.790535048379333 23.711350174617976 26.23447682108992 135-139 26.282941865486038 23.758760733377258 23.700194420053734 26.25810298108297 140-144 26.239396296597405 23.766203829356304 23.74975345936728 26.244646414679014 145-149 26.253376611543978 23.80224070001097 23.70739505073907 26.236987637705983 150 26.402830531700133 23.40000206343435 23.601780931428014 26.595386473437504 >>END_MODULE >>Per base GC content pass #Base %GC 1 49.5892606033893 2 47.43947318724347 3 49.32718968320684 4 51.29683995392862 5 51.5158790665201 6 52.61509187401977 7 52.577187200893526 8 51.306156955036805 9 51.71729949111854 10-14 51.42399340250952 15-19 51.73249336984881 20-24 51.94072834461676 25-29 52.103618358675206 30-34 52.29412339113756 35-39 52.34057553027017 40-44 52.37164561830695 45-49 52.45996003842666 50-54 52.43914712383907 55-59 52.40729375538832 60-64 52.490430942416836 65-69 52.479418388981195 70-74 52.445133329581026 75-79 52.5303475857733 80-84 52.438118246087264 85-89 52.41867020098198 90-94 52.48442242300122 95-99 52.46649534537864 100-104 52.435364852226904 105-109 52.51326993697782 110-114 52.47025009808662 115-119 52.44642896956703 120-124 52.495807676124116 125-129 52.47183361115441 130-134 52.49811477700269 135-139 52.54104484656901 140-144 52.48404271127642 145-149 52.490364249249964 150 52.99821700513764 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.5 9 2.0 10 3.0 11 4.5 12 7.5 13 27.5 14 58.0 15 70.0 16 87.0 17 159.0 18 272.5 19 384.5 20 612.5 21 902.5 22 1180.5 23 1597.5 24 2200.5 25 2939.0 26 3817.5 27 4900.0 28 5996.0 29 7144.0 30 8580.5 31 10430.0 32 12408.0 33 14314.0 34 16681.0 35 19264.5 36 22173.0 37 25781.0 38 29607.0 39 34147.5 40 39742.5 41 45827.0 42 52299.0 43 59753.5 44 68124.5 45 77781.0 46 89334.0 47 102774.5 48 117466.0 49 133209.5 50 148475.5 51 162795.0 52 175486.0 53 184571.0 54 190496.5 55 191842.5 56 188314.5 57 179855.5 58 166320.5 59 149892.0 60 131245.0 61 111207.0 62 92051.5 63 74358.5 64 57917.0 65 43778.0 66 32359.0 67 23248.0 68 16561.0 69 11562.0 70 7736.5 71 5107.5 72 3347.5 73 2201.5 74 1489.5 75 1058.5 76 679.5 77 441.5 78 451.0 79 417.0 80 383.0 81 339.5 82 307.5 83 292.0 84 177.5 85 104.5 86 45.5 87 11.5 88 1.5 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0627404465650576 3 5.97243660781129E-5 4 0.0 5 0.0 6 2.986218303905645E-5 7 0.006032160973889403 8 0.0 9 0.0 10-14 0.0014871367153450113 15-19 0.0 20-24 0.0 25-29 0.0013139360537184838 30-34 0.0 35-39 8.301686884857693E-4 40-44 0.0 45-49 0.0 50-54 5.97633859974267E-6 55-59 1.316867462018699E-4 60-64 0.0012049978996466959 65-69 9.126617527837084E-4 70-74 0.0 75-79 3.191778364355713E-4 80-84 2.653700845167532E-4 85-89 3.6238637224304E-5 90-94 1.9354746618544316E-4 95-99 1.2114073628006962E-5 100-104 4.8525545242124874E-5 105-109 3.6445844936779215E-5 110-114 6.0828911933178715E-6 115-119 0.0016995654412190672 120-124 1.8302395472426616E-4 125-129 1.8330627325392834E-5 130-134 7.955812195097323E-5 135-139 3.065014411391261E-5 140-144 6.140488607275164E-6 145-149 0.0015195251600761313 150 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 50-54 5372.0 55-59 5184.0 60-64 5170.0 65-69 5048.0 70-74 4944.0 75-79 4922.0 80-84 4769.0 85-89 4717.0 90-94 4778.0 95-99 4637.0 100-104 4787.0 105-109 4599.0 110-114 4667.0 115-119 4857.0 120-124 5053.0 125-129 5041.0 130-134 5419.0 135-139 5420.0 140-144 5568.0 145-149 55214.0 150-151 3198551.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Duplicate Percentage 56.75296164360865 #Duplication Level Relative count 1 100.0 2 52.297259762276475 3 22.508069382321107 4 8.972578466961027 5 3.7698621739921654 6 1.7968143898397617 7 0.9759882000249025 8 0.5152911203271812 9 0.31415518116601376 10++ 0.4080186194412252 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 1258500 3.4090433 3.9825845 7 AAAAA 1287290 3.3986273 4.7097926 1 >>END_MODULE